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Your microbes live on after you die − a microbiologist explains how your necrobiome recycles your body to nourish new life

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Your microbes live on after you die − a microbiologist explains how your necrobiome recycles your body to nourish new life

After you die, bacteria harvest your body for the nutrients that push daisies.
Matriyoshka/iStock via Getty Images Plus

Jennifer DeBruyn, University of Tennessee

Each human body contains a complex community of trillions of microorganisms that are important for your while you're alive. These microbial symbionts help you digest food, produce essential vitamins, protect you from infection and serve many other critical functions. In turn, the microbes, which are mostly concentrated in your gut, get to live in a relatively stable, warm environment with a steady supply of food.

But what happens to these symbiotic allies after you die?

As an environmental microbiologist who studies the necrobiome – the microbes that live in, on and around a decomposing body – I've been curious about our postmortem microbial legacy. You might assume that your microbes die with you – once your body breaks down and your microbes are flushed into the environment, they won't survive out in the real world.

In our recently published study, my research team and I share evidence that not only do your microbes continue to live on after you die, they actually play an important role in recycling your body so that new can flourish.

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Your microbes accompany you from cradle to grave.

Microbial life after death

When you die, your heart circulating the blood that has carried oxygen throughout your body. Cells deprived of oxygen start digesting themselves in a process called autolysis. Enzymes in those cells – which normally digest carbohydrates, proteins and fats for energy or growth in a controlled way – start to work on the membranes, proteins, DNA and other components that make up the cells.

The products of this cellular make excellent food for your symbiotic bacteria, and without your immune system to keep them in check and a steady supply of food from your digestive system, they turn to this new source of nutrition.

Gut bacteria, especially a class of microbes called Clostridia, spread through your organs and digest you from the inside out in a called putrefaction. Without oxygen inside the body, your anaerobic bacteria rely on energy-producing processes that don't require oxygen, such as fermentation. These create the distinctly odorous-gases signature to decomposition.

From an evolutionary standpoint, it makes sense that your microbes would have evolved ways to adapt to a dying body. Like rats on a sinking ship, your bacteria will soon have to abandon their host and survive out in the world long enough to find a new host to colonize. Taking advantage of the carbon and nutrients of your body allows them to increase their numbers. A bigger population means a higher probability that at least a few will survive out in the harsher environment and successfully find a new body.

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A microbial invasion

If you're buried in the ground, your microbes are flushed into the soil along with a soup of decomposition fluids as your body breaks down. They're entering an entirely new environment and encountering a whole new microbial community in the soil.

The mixing or coalescence of two distinct microbial communities happens frequently in nature. Coalescence happens when the roots of two plants grow together, when wastewater is emptied into a or even when two people kiss.

The outcome of mixing – which community dominates and which microbes are active – depends on several factors, such as how much environmental change the microbes experience and who was there first. Your microbes are adapted to the stable, warm environment inside your body where they receive a steady supply of food. In contrast, soil is a particularly harsh place to live – it's a highly variable environment with steep chemical and physical gradients and big swings in temperature, moisture and nutrients. Furthermore, soil already hosts an exceptionally diverse microbial community full of decomposers that are well adapted to that environment and would presumably outcompete any newcomers.

Microscopy image of Clostridium septicum
Clostridium septicum is one species of bacteria involved in putrefaction.
Joseph E. Rubin/Flickr, CC BY-NC

It's easy to assume that your microbes will die off once they are outside your body. However, my research team's previous studies have shown that the DNA signatures of host-associated microbes can be detected in the soil below a decomposing body, on the soil surface and in graves for months or years after the soft tissues of the body have decomposed. This raised the question of whether these microbes are still alive and active or if they are merely in a dormant waiting for the next host.

Our newest study suggests that your microbes are not only living in the soil but also cooperating with native soil microbes to help decompose your body. In the lab, we showed that mixing soil and decomposition fluids filled with host-associated microbes increased decomposition rates beyond that of the soil communities alone.

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We also found that host-associated microbes enhanced nitrogen cycling. Nitrogen is an essential nutrient for life, but most of the nitrogen on Earth is tied up as atmospheric gas that organisms can't use. Decomposers play a critical role recycling organic forms of nitrogen such as proteins into inorganic forms such as ammonium and nitrate that microbes and plants can use.

Our new findings suggest that our microbes are likely playing a part in this recycling process by converting large nitrogen-containing molecules like proteins and nucleic acids into ammonium. Nitrifying microbes in the soil can then convert the ammonium into nitrate.

Next generation of life

The recycling of nutrients from detritus, or nonliving organic matter, is a core process in all ecosystems. In terrestrial ecosystems, decomposition of dead animals, or carrion, fuels biodiversity and is an important link in food webs.

Living animals are a bottleneck for the carbon and nutrient cycles of an ecosystem. They slowly accumulate nutrients and carbon from large of the landscape throughout their lives then deposit it all at once in a small, localized spot when they die. One dead animal can a whole pop-up food web of microbes, soil fauna and arthropods that make their living off carcasses.

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Insect and animal scavengers help further redistribute nutrients in the ecosystem. Decomposer microbes convert the concentrated pools of nutrient-rich organic molecules from our bodies into smaller, more bioavailable forms that other organisms can use to support new life. It's not uncommon to see plant life flourishing near a decomposing animal, visible evidence that nutrients in bodies are being recycled back into the ecosystem.

That our own microbes play an important role in this cycle is one microscopic way we live on after death.The Conversation

Jennifer DeBruyn, Professor of Environmental Microbiology, University of Tennessee

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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Understanding how ions flow in and out of the tiniest pores promises better energy storage devices

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theconversation.com – Ankur Gupta, Assistant Professor of Chemical and Biological Engineering, of Colorado Boulder – 2024-05-28 07:10:58

Understanding how ions flow in and out of the tiniest pores promises better energy storage devices

The physics of how ions flow in supercapacitors required an .
Weiquan Lin/Moment via Getty Images

Ankur Gupta, University of Colorado Boulder

Modern life relies on electricity and electrical devices, from cars and buses to phones and laptops, to the electrical in homes. Behind many of these devices is a type of energy storage device, the supercapacitor. My team of engineers is working on making these supercapacitors even better at storing energy by studying how they store energy at the nanoscale.

Supercapacitors, like batteries, are energy storage devices. They charge faster than batteries, often in a few seconds to a minute, but generally store less energy. They're used in devices that require storing or supplying a burst of energy over a short span of time. In your car and in elevators, they can help recover energy during braking to slow down. They help meet fluctuating energy demand in laptops and cameras, and they stabilize the energy loads in electrical grids.

Two metal supercapacitors, which are cylinders with metal prongs on one end.
Supercapacitors store energy for use in electronics.
coddy/iStock via Getty Images Plus

Batteries operate via reactions in which chemical species give or take electrons. Supercapacitors, in contrast, do not rely on reactions and are kind of like a charge sponge. When you dip a sponge in water, it soaks up the water because the sponge is porous – it contains empty pores where water can be absorbed. The best supercapacitors soak up the most charge per unit of volume, meaning they have a high capacity for energy storage without taking up too much .

In research published in the journal Proceedings of the National Academy of Sciences in May 2024, my student Filipe Henrique, collaborator Pawel Zuk and I describe how ions move in a network of nanopores, or tiny pores that are only nanometers wide. This research could one day improve the energy storage capabilities of supercapacitors.

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All about the pores

Scientists can increase a material's capacitance, or ability to store charge, by making its surface porous at the nanoscale. A nanoporous material can have a surface area as high as 20,000 square meters (215,278 square feet) – the equivalent of about four football fields – in just 10 grams (one-third of an ounce) of weight.

Over the past 20 years, researchers have studied how to control this porous structure and the flow of ions, which are tiny charged particles, through the material. Understanding the flow of ions can help researchers control the rate at which a supercapacitor charges and releases energy.

But researchers still don't know exactly how ions flow into and out of porous materials.

Each pore in a sheet of porous materials is a small hole filled with both positive and negative ions. The pore's opening connects to a reservoir of positive and negative ions. These ions from an electrolyte, a conductive fluid.

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A diagram showing a supercapacitor, full of a liquid electrolyte and porous material, with a membrane separating the positive and negative sides.
GettyImages.
Bogdana Pashkevich/iStock via Getty Images Plus

For instance, if you put salt in water, each salt molecule separates into a positively charged sodium ion and a negatively charged chloride ion.

When the surface of the pore is charged, ions flow from the reservoir into the pore or vice versa. If the surface is positively charged, negative ions flow into the pore from the reservoir, and positively charged ions the pore as they're repelled away. This flow forms capacitors, which hold the charge in place and store energy. When the surface charge is discharged, the ions flow in the reverse direction and the energy is released.

Now, imagine a pore divides into two different branched pores. How do the ions flow from the main pore to these branches?

Think of the ions as cars and pores as roads. Traffic flow on one single road is straightforward. But at an intersection, you need rules to prevent an or traffic jam, so we have traffic lights and roundabouts. However, scientists don't totally understand the rules that ions flowing through a junction follow. Figuring out these rules could help researchers understand how a supercapacitor will charge.

Modifying a law of physics

Engineers generally use a set of physics laws called “Kirchoff's laws” to determine the distribution of electrical current across a junction. However, Kirchhoff's circuit laws were derived for electron transport, not ion transport.

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Electrons only move when there's an electric field, but ions can move without an electric field, through diffusion. In the same way a pinch of salt slowly dissolves throughout a glass of water, ions move from more concentrated areas to less concentrated areas.

A diagram showing diffusion, with molecules clustered in one area in a fluid, that then spread out to distribute evenly.
Ions also move via diffusion, from areas of high concentration to low concentration.
petrroudny/iStock via Getty Images Plus

Kirchhoff's laws are like accounting principles for circuit junctions. The first says that the current entering a junction must equal the current leaving it. The second law states that voltage, the pressure pushing electrons through the current, can't abruptly change across a junction. Otherwise, it would create an extra current and disrupt the balance.

Kirchoff's laws govern the current in circuit junctions.

Since ions also move by diffusion and not only by the use of an electric field, my team modified Kirchhoff's laws to fit ionic currents. We replaced voltage, V, with an electrochemical voltage, φ, which combines voltage and diffusion. This modification us to analyze networks of pores, which was previously impossible.

We used the modified Kirchoff's law to simulate and predict how ions flow through a large network of nanopores.

The road ahead

Our study found that splitting current from a pore into junctions can slow down how fast charged ions flow into the material. But that depends on where the split is. And how these pores are arranged throughout the materials affects the charging speed, too.

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This research new doors to understanding the materials in supercapacitors and developing better ones.

For example, our model can help scientists simulate different pore networks to see which best matches their experimental data and optimize the materials they use in supercapacitors.

While our work focused on simple networks, researchers could apply this approach to much larger and more complex networks to better understand how a material's porous structure affects its performance.

In the future, supercapacitors may be made out of biodegradable materials, power flexible wearable devices, and may be customizable through 3D printing. Understanding ion flow is a key step toward improving supercapacitors for faster electronics.The Conversation

Ankur Gupta, Assistant Professor of Chemical and Biological Engineering, University of Colorado Boulder

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Animals self-medicate with plants − behavior people have observed and emulated for millennia

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theconversation.com – Adrienne , Research Scholar, Classics and History and Philosophy of Science, Stanford – 2024-05-24 07:29:22

A goat with an arrow wound nibbles the medicinal herb dittany.

O. Dapper, CC BY

Adrienne Mayor, Stanford University

When a wild orangutan in Sumatra recently suffered a facial wound, apparently after fighting with another male, he did something that caught the attention of the scientists observing him.

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The animal chewed the leaves of a liana vine – a plant not normally eaten by apes. Over several days, the orangutan carefully applied the juice to its wound, then covered it with a paste of chewed-up liana. The wound healed with only a faint scar. The tropical plant he selected has antibacterial and antioxidant properties and is known to alleviate pain, fever, bleeding and inflammation.

The striking story was picked up by media worldwide. In interviews and in their research paper, the scientists stated that this is “the first systematically documented case of active wound treatment by a wild animal” with a biologically active plant. The discovery will “ new insights into the origins of human wound care.”

left: four leaves next to a ruler. right: an orangutan in a treetop

Fibraurea tinctoria leaves and the orangutan chomping on some of the leaves.

Laumer et al, Sci Rep 14, 8932 (2024), CC BY

To me, the behavior of the orangutan sounded familiar. As a historian of ancient science who investigates what Greeks and Romans knew about plants and animals, I was reminded of similar cases reported by Aristotle, Pliny the Elder, Aelian and other naturalists from antiquity. A remarkable body of accounts from ancient to medieval times self-medication by many different animals. The animals used plants to treat illness, repel parasites, neutralize poisons and heal wounds.

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The term zoopharmacognosy – “animal medicine knowledge” – was invented in 1987. But as the Roman natural historian Pliny pointed out 2,000 years ago, many animals have made medical discoveries useful for humans. Indeed, a large number of medicinal plants used in modern were first discovered by Indigenous peoples and past cultures who observed animals employing plants and emulated them.

What you can learn by watching animals

Some of the earliest written examples of animal self-medication appear in Aristotle's “History of Animals” from the fourth century BCE, such as the well-known habit of dogs to eat grass when ill, probably for purging and deworming.

Aristotle also noted that after hibernation, bears seek wild garlic as their first food. It is rich in vitamin C, iron and magnesium, healthful nutrients after a long winter's nap. The Latin name reflects this folk belief: Allium ursinum translates to “bear lily,” and the common name in many other languages refers to bears.

medieval image of a stag wounded by a hunter's arrow, while a doe is also wounded, but eats the herb dittany, causing the arrow to come out

As a hunter lands several arrows in his quarry, a wounded doe nibbles some growing dittany.

British Library, Harley MS 4751 (Harley Bestiary), folio 14v, CC BY

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Pliny explained how the use of dittany, also known as wild oregano, to treat arrow wounds arose from watching wounded stags grazing on the herb. Aristotle and Dioscorides credited wild goats with the discovery. Vergil, Cicero, Plutarch, Solinus, Celsus and Galen claimed that dittany has the ability to expel an arrowhead and close the wound. Among dittany's many known phytochemical properties are antiseptic, anti-inflammatory and coagulating effects.

According to Pliny, deer also knew an antidote for toxic plants: wild artichokes. The leaves relieve nausea and stomach cramps and protect the liver. To cure themselves of spider bites, Pliny wrote, deer ate crabs washed up on the beach, and sick goats did the same. Notably, crab shells contain chitosan, which boosts the immune system.

When elephants accidentally swallowed chameleons hidden on green foliage, they ate olive leaves, a natural antibiotic to combat salmonella harbored by lizards. Pliny said ravens eat chameleons, but then ingest bay leaves to counter the lizards' toxicity. Antibacterial bay leaves relieve diarrhea and gastrointestinal distress. Pliny noted that blackbirds, partridges, jays and pigeons also eat bay leaves for digestive problems.

17th century etching of a weasel and a basilisk in conflict

A weasel wears a belt of rue as it attacks a basilisk in an illustration from a 1600s bestiary.

Wenceslaus Hollar/Wikimedia Commons, CC BY

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Weasels were said to roll in the evergreen plant rue to counter wounds and snakebites. Fresh rue is toxic. Its medical value is unclear, but the dried plant is included in many traditional folk medicines. Swallows collect another toxic plant, celandine, to make a poultice for their chicks' eyes. Snakes emerging from hibernation rub their eyes on fennel. Fennel bulbs contain compounds that promote tissue repair and immunity.

According to the naturalist Aelian, who lived in the third century BCE, the Egyptians traced much of their medical knowledge to the wisdom of animals. Aelian described elephants treating spear wounds with olive flowers and oil. He also mentioned storks, partridges and turtledoves crushing oregano leaves and applying the paste to wounds.

The study of animals' remedies continued in the Middle Ages. An example from the 12th-century English compendium of animal lore, the Aberdeen Bestiary, tells of bears coating sores with mullein. Folk medicine prescribes this flowering plant to soothe pain and heal burns and wounds, thanks to its anti-inflammatory chemicals.

Ibn al-Durayhim's 14th-century manuscript “The Usefulness of Animals” reported that swallows healed nestlings' eyes with turmeric, another anti-inflammatory. He also noted that wild goats chew and apply sphagnum moss to wounds, just as the Sumatran orangutan did with liana. Sphagnum moss dressings neutralize bacteria and combat infection.

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Nature's pharmacopoeia

Of course, these premodern observations were folk knowledge, not formal science. But the stories reveal long-term observation and imitation of diverse animal species self-doctoring with bioactive plants. Just as traditional Indigenous ethnobotany is leading to lifesaving drugs today, scientific testing of the ancient and medieval claims could to discoveries of new therapeutic plants.

Animal self-medication has become a rapidly growing scientific discipline. Observers observations of animals, from birds and rats to porcupines and chimpanzees, deliberately employing an impressive repertoire of medicinal substances. One surprising observation is that finches and sparrows collect cigarette butts. The nicotine kills mites in bird nests. Some veterinarians even allow ailing dogs, horses and other domestic animals to choose their own prescriptions by sniffing various botanical compounds.

Mysteries remain. No one knows how animals sense which plants cure sickness, heal wounds, repel parasites or otherwise promote . Are they intentionally responding to particular health crises? And how is their knowledge transmitted? What we do know is that we humans have been learning healing secrets by watching animals self-medicate for millennia.The Conversation

Adrienne Mayor, Research Scholar, Classics and History and Philosophy of Science, Stanford University

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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What Philadelphians need to know about the city’s 7,000-camera surveillance system

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theconversation.com – Albert Fox Cahn, Practitioner-in-Residence, Information Institute, New York – 2024-05-24 07:28:38

Surveillance cameras are getting cheaper, more powerful and more ubiquitous.

Denniro/iStock via Getty Images Plus

Albert Fox Cahn, New York University

The Philadelphia Inquirer recently investigated Philadelphia's use of what it described as a “little-scrutinized, 7,000-camera system that is exposing across the city to heightened surveillance with few rules or safeguards against abuse.” The article detailed how Philadelphia narcotics cops not only allegedly failed to disclose their use of surveillance in arrest reports or to prosecutors, but also that the video footage at times proved officers were lying when they testified.

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U.S. talked to Albert Fox Cahn, founder and executive director of the nonprofit Surveillance Technology Oversight Project and a practitioner-in-residence at NYU School of Law, about what these new video can do and the privacy and other issues they raise.

What can these cameras do?

The closed-circuit television, or CCTV, cameras most Americans pass each day may look interchangeable, but a lot has changed behind the lens in recent years. As video surveillance cameras have become cheaper and more ubiquitous, they have also grown more powerful – featuring increasingly high-definition images and the ability to pan, tilt and zoom. But the most significant change to cameras like those used in Philadelphia is the networks that police departments set up to aggregate these countless images of city residents' lives.

A variety of AI tools can also harvest this data in new ways that some may find alarming.

Automated license plate reader software can both track drivers across the city in real time and create a long-term log of their cars' movements. Want to know where a driver is now or was parked two years ago? Just check the database.

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And pedestrians are no less prone to surveillance. Facial recognition software can scan images to automatically identify individuals and track them across the city.

How widespread is this technology?

According to the Inquirer's investigation, Philadelphia's camera network grew at an astounding pace. In the past decade, the city has gone from 216 cameras to a network of more than 7,000 cameras operated by and transportation officials.

But those are just the cameras that city officials directly control and can access in real time.

In addition, police routinely turn to the images captured by private surveillance cameras. This includes everything from multimillion-dollar, internet-enabled camera systems at large stores, offices and universities to the individual cameras that homeowners or small-business owners screw into their door frames or exteriors. The public simply has no idea how many of these private cameras are in operation or how often their data is requested.

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How is this different from traditional police video surveillance?

Traditional cameras offered a narrow, grainy perspective on a single fixed place. These systems not only collected much less data than contemporary cameras, but they also retained far less.

A single CCTV camera at a bank might help police identify a suspect in a robbery, but it poses no privacy threat beyond that. It is confined to a small space where privacy concerns are minimal and security concerns are high. But mass camera deployments create a fundamentally different model, collecting far more information on all of us and creating far greater potential for misuse.

Police have attempted these techniques for decades, but the technology simply wasn't up to the task. When the City of London Police deployed its so-called “ring of steel” security system in the 1990s, fewer than two dozen cameras tried to track the cars entering a tiny portion of the British capital, surveilling roughly a square kilometer of the city's financial core. Officers manually jotted down vehicle plate numbers and surveilled drivers' profile photos.

The labor-intensive exercise was impossible to scale.

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To deploy such a system across an entire city would likely have taken every police officer in the city and then some. Through automation, technology enables this mass surveillance by reducing the marginal cost of tracking, allowing police to expand monitoring far more broadly than would have been financially or pragmatically possible before.

People walk past a police van in street underneath elevated train

Security cameras hang from the elevated train tracks at Kensington and Allegheny avenues in North Philadelphia.

Spencer Platt/Getty Images

What privacy concerns does it raise?

A single camera can capture our image; a citywide camera system can reconstruct our lives. Networked camera systems like those in Philadelphia, when combined with smartphones and other internet-enabled devices, allow officers to reconstruct an individual's movements for days or weeks at a time, all without any court oversight.

While it would take a warrant to install a GPS tracker on a resident's car, police can recreate GPS-like location tracking without a warrant, all thanks to mass camera systems. And facial recognition in municipal cameras threatens the First Amendment, which protects of speech, religion and peaceful assembly. The police are armed with a way to track nearly every person at a political protest, abortion clinic or house of worship. Such surveillance melts away the anonymity that is indispensable to an open society.

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Are there other risks or unintended consequences?

I believe giving thousands of city employees the keys to a small surveillance is a recipe for disaster.

The Philadelphia Inquirer found that the city has policies that forbid zooming in on residents for amusement, spying on someone by zooming in through their window, or blatant racial profiling. But what it didn't find was evidence that these safeguards were being enforced.

When thousands of employees can spy on their neighbors, romantic partners and business rivals on a whim, it raises the question: Who watches the watchers?

At least for now, the grim answer appears to be no one.The Conversation

Albert Fox Cahn, Practitioner-in-Residence, Information Law Institute, New York University

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