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DNA says you’re related to a Viking, a medieval German Jew or a 1700s enslaved African? What a genetic match really means

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DNA says you're related to a Viking, a medieval German Jew or a 1700s enslaved African? What a genetic match really means

A genetic match to an ancient person doesn't mean you're more related genealogically.
Mark Edward Atkinson/Tetra Images via Getty Images

Shai Carmi, Hebrew University of Jerusalem and Harald Ringbauer, Max Planck Institute for Evolutionary Anthropology

In 2022, we reported the DNA sequences of 33 medieval people buried in a Jewish cemetery in Germany. Not long after we made the data publicly available, people started comparing their own DNA with that of the 14th-century German Jews, finding many “matches.” These medieval individuals had DNA fragments shared with thousands of people who have uploaded their DNA sequence to an online database, the same way you share DNA fragments with your relatives.

But what type of a relationship with a medieval person does a shared DNA fragment imply?

It turns out, not too much that will with your roots research.

We are population geneticists who work with ancient DNA. We understand how exciting it can be to find a genetic link to particular people who lived many generations ago. But these DNA matches aren't the tight ties you may be imagining. Here's how it works.

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Sequencing DNA from those who lived long ago

Ancient DNA is a new and rapidly growing field, with a Nobel Prize awarded in 2022 to Svante Pääbo for his foundational work.

Using samples taken from skull bones or teeth, aDNA researchers can sequence the DNA of people who lived as far back as 100,000 years ago. More than 10,000 ancient DNA sequences, or genomes, are currently available. These genomes, which from all corners of the world, have dramatically revolutionized scientists' understanding of human origins.

A new trend in ancient DNA is sequencing the genomes of “historical” individuals: those who have lived during the past millennium.

Examples include genomes from Sweden, Norway, Denmark, Iceland, Poland, Southeastern Europe, and London, Cambridge and Norwich in the U.K. Outside Europe, scientists have sequenced historical genomes from East Asia, the Swahili coast, South Africa, the Canary Islands, Lebanon, Machu Picchu, the Caribbean and the San Francisco Bay area. Genomes of enslaved Africans from Delaware, Maryland, South Carolina and St. Helena are also available.

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Some historical genomes belong to named individuals, Ludwig van Beethoven, the family of the last Russian czar, medieval Hungarian royals, the Lakota Sioux leader Sitting Bull and King Richard III of England.

horse-drawn wagon with two black-clad people in front, pulling coffin marked 'Richard III, 1452-1485'
The remains of King Richard III were reinterred in 2015.
Christopher Furlong via Getty Images News

How could you compare your own DNA with that of these historical people?

Several direct-to-consumer genetic testing companies, such as 23andMe, MyHeritage or Ancestry, make reading your own genome sequence simple and affordable. They compare your DNA with that of their other customers. They identify relatives who share with you long, continuous stretches of identical DNA and to you these matches – from the closest to the more distant.

After initial deliberation, 23andMe now lets customers compare their genomes with historical people. Other genetic testing companies don't yet, but passionate genealogists can take matters into their own hands. For example, the service GEDmatch lets users upload their own DNA data, along with published DNA sequences of any historical people. Once uploaded, GEDmatch will identify any user with whom you share genetic material.

two lines representing chromosomes with green, yellow and red bands along their length
A comparison of one chromosome's DNA sequence between a 14th-century German Jew and two living people who uploaded their DNA to GEDmatch. Each thin vertical bar represents one letter in the DNA sequence and is color-coded based on whether it is a match. A shared DNA fragment appears between living person 1 and the medieval person.
GEDMatch

So, what does a genetic match with a medieval person mean for your genealogy?

Surprisingly, very little.

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Where genealogy and genetics diverge

The first thing to understand is how many ancestors you have in each past generation. One generation back, you have two ancestors. Two generations back, that doubles to four. Then eight, and 16. By 30 generations ago, around the 12th century, you have over one ancestors.

Clearly, at this point, your ancestors include most people from your population who lived back then, excluding a small fraction who left no long-term descendants. This includes, if you have European origins, notable people such as Charlemagne or Edward I, but equally also people of every medieval social class. Your family tree reaches each of these ancestors through numerous lines.

a web of red lines getting denser and denser toward the top of the image, with generations marked 0 to 15 running vertically upwards
The red dot at generation 0 represents a present-day person in a simulated population of 100,000 people. Each tiny red dot represents one person, and the red lines connect people to their . Ancestors reached through multiple lines in the family tree are marked in black circles. The number of lines becomes so large so quickly that beyond 15 generations ago, most ancestors are reached by multiple lines.
Graham Coop

Mathematical research demonstrates the surprising fact. In any given population, the number of lines in your family tree that reach any specific medieval person is about the same between you and everyone else who belongs to the same population you do. In other words, everyone alive is equally related, genealogically, to all medieval people from that population.

The next step is to understand how many ancestors you actually inherit DNA from. Surprisingly again, very few.

Despite your millions or more medieval ancestors, you inherit DNA from only a tiny fraction of them. So, we're sorry, you probably didn't inherit any DNA from Charlemagne or Edward I. For example, you have only about 2,000 genetic ancestors from the 12th century. In other words, your DNA sequence is a mosaic of approximately 2,000 “fragments,” each tracing back to a single 12th-century person.

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Who are the medieval people whose DNA you inherited? Each fragment of your DNA descends from a random line up your family tree – father's mother's mother's father and so on – at each generation in the past, selecting at random one of two parents. The more lines in your family tree that reach a certain medieval person, the more likely you are to inherit DNA from that person.

family tree
For someone alive today, the number of genealogical ancestors doubles each generation. But each DNA fragment (colored bars) is inherited through a random, zigzagging path up the family tree, meaning DNA is inherited only from a small fraction of one's ancestors.
Shai Carmi, CC BY-ND

But remember, the number of family lines that reach a medieval person is about the same for all present-day individuals from a given population. Therefore, all individuals inherit DNA from any medieval person with very similar probabilities. So, sharing genetic material with one particular medieval person or another is just a matter of chance, and everyone is playing the same .

Here's an analogy. Going to a casino and rolling a roulette ball onto 24 does not mean 24 is your special number. Anyone else might have rolled 24 as well. Similarly, sharing a DNA fragment with any one out of your millions of medieval genealogical ancestors does not mean any special relationship – beyond sharing a DNA fragment.

And if you don't have a shared segment, you just didn't get lucky. It doesn't mean you're any less genealogically related to that medieval person than anyone else from your population who does have a shared segment.

As a side note, a “population” is not always well defined, but these arguments hold generally for people with similar origins.

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How to interpret a historical DNA match

Consider again the medieval German Jews. Some present-day Ashkenazi (European) Jews will share DNA with one particular medieval Jew. Some will share with another. Some will share with none. It's a lottery draw. And given that most Ashkenazi Jews today are genealogically related in a very similar way to the medieval German Jews, seeing that shared DNA fragment does not imply any unique genealogical relatedness.

On the other hand, if you're willing to consider more recent ancestors, DNA matches can be informative. The same mathematical models show that the number of family lines reaching a particular historical person living around 200 or 300 years ago will be very different across present-day people. Therefore, a DNA match with an 18th-century person implies a more specific genealogical relationship, one that most other present-day indviduals do not have.

This pattern was demonstrated in a recent 23andMe study. Comparing the genomes of 18th-century enslaved Africans from Maryland to more than 9 million of their customers, 23andMe discovered over 41,000 living relatives, including a few nearly direct descendants.

3D models of enslaved African Americans: one a teenage boy, one a woman in her 30s
Facial reconstructions based on skeletal remains of enslaved African Americans who worked at Catoctin Furnace in Maryland, where scientists have also sequenced ancient DNA.
Katherine Frey/The Washington Post via Getty Images

How far back in time does a DNA match still have genealogical meaning? For example, are DNA matches informative in the period between the late Middle Ages and the 17th century? We don't know yet. Future research will be needed to clarify this question, as well as deviations from the simple model of a single, freely mixing population.

In the meantime, as scientists rapidly accumulate more and more historical genome sequences, keep the quirky behavior of human genealogies in mind when interpreting a DNA match.The Conversation

Shai Carmi, Associate Professor of Population and Statistical Genetics, Hebrew University of Jerusalem and Harald Ringbauer, Group Leader, Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology

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This article is republished from The Conversation under a Creative Commons license. Read the original article.

The Conversation

Vaccines tell a success story that Robert F. Kennedy Jr. and Trump forget – here are some key reminders

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theconversation.com – Mark R. O'Brian, Professor and Chair of Biochemistry, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo – 2024-07-26 07:11:29
Many fatal childhood illnesses can be prevented with vaccination.
Halfpoint Images/Moment via Getty Images

Mark R. O'Brian, University at Buffalo

Vaccinations have provided significant protection for the public against infectious diseases. However, there was a modest decrease in support in 2023 nationwide for vaccine requirements for children to attend public schools.

In addition, the presidential candidacy of Robert F. Kennedy Jr., a leading critic of childhood vaccination, has given him a prominent platform in which to amplify his views. This includes an extensive interview on the “Joe Rogan Experience,” a podcast with over 14 million subscribers. Notably, former President Donald Trump has said he is opposed to mandatory school COVID-19 vaccinations, and in a phone call Trump apparently wasn't aware was being recorded, he appeared to endorse Kennedy's views toward vaccines.

I am a biochemist and molecular biologist studying the roles microbes play in and disease. I also teach medical students and am interested in how the public understands science.

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Here are some facts about vaccines that skeptics like Kennedy get wrong:

Vaccines are effective and safe

Public health data from 1974 to the present conclude that vaccines have saved at least 154 million lives worldwide over the past 50 years. Vaccines are also constantly monitored for safety in the U.S.

Nevertheless, the false claim that vaccines cause autism persists despite study after study of large populations throughout the world showing no causal link between them.

Claims about the dangers of vaccines often come from misrepresenting scientific research papers. Kennedy cites a 2005 report allegedly showing massive brain inflammation in monkeys in response to vaccination, when in fact the authors of that study state that there were no serious medical complications. A separate 2003 study that Kennedy claimed showed a 1,135% increase in autism in vaccinated versus unvaccinated children actually found no consistent significant association between vaccines and neurodevelopmental outcomes.

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Kennedy also claims that a 2002 vaccine study included a control group of children 6 months of age and younger who were fed mercury-contaminated tuna sandwiches. This claim is false.

Gloved hands of clinician placing bandaid on child's arm, a syringe and vaccine vial beside them
Vaccines are continuously monitored for safety before and long after they're available to the general public.
Elena Zaretskaya/Moment via Getty Images

Aluminum adjuvants help boost immunity

Kennedy is co-counsel with a firm that is suing the pharmaceutical company Merck based in part on the unfounded assertion that the aluminum in one of its vaccines causes neurological disease. Aluminum is added to many vaccines as an adjuvant to strengthen the body's immune response to the vaccine, thereby enhancing the body's defense against the targeted microbe.

The law firm's claim is based on a 2020 report showing that brain tissue from some with Alzheimer's disease, autism and multiple sclerosis have elevated levels of aluminum. The authors of that study do not assert that vaccines are the source of the aluminum, and vaccines are unlikely to be the culprit.

Notably, the brain samples analyzed in that study were from 47- to 105-year-old patients. Most people are exposed to aluminum primarily through their diets, and aluminum is eliminated from the body within days. Therefore, aluminum exposure from childhood vaccines is not expected to persist in those patients.

Vaccines undergo the same approval process as other drugs

Clinical trials for vaccines and other drugs are blinded, randomized and placebo-controlled studies. For a vaccine trial, this means that participants are randomly divided into one group that receives the vaccine and a second group that receives a placebo saline solution. The researchers carrying out the study, and sometimes the participants, do not know who has received the vaccine or the placebo until the study has finished. This eliminates bias.

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Results are published in the public domain. For example, vaccine trial data for COVID-19, human papilloma virus and rotavirus is available for anyone to access.

Vaccine manufacturers are liable for injury or death

Kennedy's against Merck contradicts his insistence that vaccine manufacturers are fully immune from litigation.

His claim is based on an incorrect interpretation of the National Vaccine Injury Compensation Program, or VICP. VICP is a no-fault federal program created to reduce frivolous lawsuits against vaccine manufacturers, which threaten to cause vaccine shortages and a resurgence of vaccine-preventable disease.

A person injury from a vaccine can petition the U.S. Court of Federal Claims through the VICP for monetary compensation. If the VICP petition is denied, the claimant can then sue the vaccine manufacturer.

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Gloved hand picking up vaccine vial among a tray of vaccine vials
Drug manufacturers are liable for any vaccine-related or injury.
Andreas Ren Photography Germany/Image Source via Getty Images

The majority of cases resolved under the VICP end in a negotiated settlement between parties without establishing that a vaccine was the cause of the claimed injury. Kennedy and his law firm have incorrectly used the payouts under the VICP to assert that vaccines are unsafe.

The VICP gets the vaccine manufacturer off the hook only if it has complied with all requirements of the Federal Food, Drug and Cosmetic Act and exercised due care. It does not protect the vaccine maker from claims of fraud or withholding information regarding the safety or efficacy of the vaccine during its or after approval.

Good nutrition and sanitation are not substitutes for vaccination

Kennedy asserts that populations with adequate nutrition do not need vaccines to avoid infectious diseases. While it is clear that improvements in nutrition, sanitation, water treatment, food safety and public health measures have played important roles in reducing deaths and severe complications from infectious diseases, these factors do not eliminate the need for vaccines.

After World War II, the U.S. was a wealthy nation with substantial health-related infrastructure. Yet, Americans reported an average of 1 million cases per year of now-preventable infectious diseases.

Vaccines introduced or expanded in the 1950s and 1960s against diseases like diphtheria, pertussis, tetanus, measles, polio, mumps, rubella and Haemophilus influenza type B have resulted in the near or complete eradication of those diseases.

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It's easy to forget why many infectious diseases are rarely encountered . The of vaccines does not always tell its own story. It must be retold again and again to counter misinformation.The Conversation

Mark R. O'Brian, Professor and Chair of Biochemistry, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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Tagging seals with sensors helps scientists track ocean currents and a changing climate

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theconversation.com – Lilian (Lily) Dove, Postdoctoral Fellow of Oceanography, Brown – 2024-07-25 07:08:14

Tagging seals with sensors helps scientists track ocean currents and a changing climate

Lilian Dove, Brown University

A surprising technique has helped scientists observe how Earth's oceans are changing, and it's not using specialized robots or artificial intelligence. It's tagging seals.

Several species of seals around and on Antarctica and regularly dive more than 100 meters in search of their next meal. These seals are experts at swimming through the vigorous ocean currents that make up the Southern Ocean. Their tolerance for deep waters and ability to navigate rough currents make these adventurous creatures the perfect research assistants to oceanographers like my colleagues and me study the Southern Ocean.

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Seal sensors

Researchers have been attaching tags to the foreheads of seals for the past two decades to collect data in remote and inaccessible regions. A researcher tags the seal during mating season, when the marine mammal to shore to rest, and the tag remains attached to the seal for a year.

A researcher glues the tag to the seal's head – tagging seals does not affect their behavior. The tag detaches after the seal molts and sheds its fur for a new coat each year.

The tag collects data while the seal dives and transmits its location and the scientific data back to researchers via satellite when the seal surfaces for .

First proposed in 2003, seal tagging has grown into an international collaboration with rigorous sensor accuracy standards and broad data sharing. Advances in satellite technology now allow scientists to have near-instant access to the data collected by a seal.

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New scientific discoveries aided by seals

The tags attached to seals typically carry pressure, temperature and salinity sensors, all properties used to assess the ocean's rising temperatures and changing currents. The sensors also often contain chlorophyll fluorometers, which can data about the water's phytoplankton concentration.

Phytoplankton are tiny organisms that form the base of the oceanic food web. Their presence often means that animals such as fish and seals are around.

The seal sensors can also tell researchers about the effects of climate change around Antarctica. Approximately 150 tons of ice melts from Antarctica every year, contributing to global sea-level rise. This melting is driven by warm water carried to the ice shelves by oceanic currents.

With the data collected by seals, oceanographers have described some of the physical pathways this warm water travels to reach ice shelves and how currents transport the resulting melted ice away from glaciers.

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Seals regularly dive under sea ice and near glacier ice shelves. These regions are challenging, and can even be dangerous, to sample with traditional oceanographic methods.

Across the open Southern Ocean, away from the Antarctic coast, seal data has also shed light on another pathway causing ocean warming. Excess heat from the atmosphere moves from the ocean surface, which is in contact with the atmosphere, down to the interior ocean in highly localized regions. In these , heat moves into the deep ocean, where it can't be dissipated out through the atmosphere.

The ocean stores most of the heat energy put into the atmosphere from human activity. So, understanding how this heat moves around helps researchers monitor oceans around the globe.

Seal behavior shaped by ocean physics

The seal data also provides marine biologists with information about the seals themselves. Scientists can determine where seals look for food. Some regions, called fronts, are hot spots for elephant seals to hunt for food.

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In fronts, the ocean's circulation creates turbulence and mixes water in a way that brings nutrients up to the ocean's surface, where phytoplankton can use them. As a result, fronts can have phytoplankton blooms, which attract fish and seals.

Scientists use the tag data to see how seals are adapting to a changing climate and warming ocean. In the short term, seals may benefit from more ice melt around the Antarctic continent, as they tend to find more food in coastal areas with holes in the ice. Rising subsurface ocean temperatures, however, may change where their prey is and ultimately threaten seals' ability to thrive.

Seals have helped scientists understand and observe some of the most remote regions on Earth. On a changing planet, seal tag data will continue to provide observations of their ocean , which has vital implications for the rest of Earth's climate system.The Conversation

Lilian Dove, Postdoctoral Fellow of Oceanography, Brown University

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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Cheesemaking is a complex science – a food chemist explains the process from milk to mozzarella

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theconversation.com – John A. Lucey, Professor of Food Science, of Wisconsin- – 2024-07-24 07:18:57
Storing cheese wheels to let them age intensifies the flavor.
AP Photo/Antonio Calanni

John A. Lucey, University of Wisconsin-Madison

Cheese is a relatively simple food. It's made with milk, enzymes – these are proteins that can chop up other proteins – bacterial cultures and salt. Lots of complex chemistry goes into the cheesemaking process, which can determine whether the cheese turns out soft and gooey like mozzarella or hard and fragrant like Parmesan.

In fact, humans have been making cheese for about 10,000 years. Roman soldiers were given cheese as part of their rations. It is a nutritious food that provides protein, calcium and other minerals. Its long shelf life allows it to be transported, traded and shipped long distances.

I am a food scientist at the University of Wisconsin who has studied cheese chemistry for the past 35 years.

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In the U.S., cheese is predominantly made with cow's milk. But you can also find cheese made with milk from other animals like sheep, goats and even buffalo and yak.

Unlike with yogurt, another fermented dairy product, cheesemakers whey – which is water – to make cheese. Milk is about 90% water, whereas a cheese like cheddar is less than about 38% water.

Removing water from milk to make cheese results in a harder, firmer product with a longer shelf life, since milk is very perishable and spoils quickly. Before the invention of refrigeration, milk would quickly sour. Making cheese was a way to preserve the nutrients in milk so you could eat it weeks or months in the future.

How is cheese made?

All cheesemakers first pump milk into a cheese vat and add a special enzyme called rennet. This enzyme destabilizes the proteins in the milk – the proteins then aggregate together and make a gel. The cheesemaker is essentially turning milk from a liquid into a gel.

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After anywhere from 10 minutes to an hour, depending on the type of cheese, the cheesemaker cuts this gel, typically into cubes. Cutting the gel helps some of the whey, or water, separate from the cheese curd, which is made of aggregated milk and looks like a yogurt gel. Cutting the gel into cubes lets some water escape from the newly cut surfaces through small pores, or openings, in the gel.

The cheesemaker's goal is to remove as much whey and moisture from the curd as they need to for their specific recipe. To do so, the cheesemaker might stir or heat up the curd, which helps release whey and moisture. Depending on the type of cheese made, the cheesemaker will drain the whey and water from the vat, leaving behind the cheese curds.

A man in a white lab coat, hairnet and gloves pulls a device through a large tub of white liquid.
Wisconsin Master Cheesemaker Gary Grossen cuts a vat of cheese with a cheese harp during a cheesemaking short course at the Center for Dairy Research in Madison, Wis. Cutting helps release whey during the cheesemaking .
UW Center for Dairy Research

For a harder cheese like cheddar, the cheesemaker adds salt directly to the curds while they're still in the vat. Salting the curds expels more whey and moisture. The cheesemaker then packs the curds together in forms or hoops – these are containers that shape the curds into a block or wheel and hold them there – and places them under pressure. The pressure squeezes the curds in these hoops, and they knit together to form a solid block of cheese.

Cheesemakers salt other cheeses, like mozzarella, by placing them in a salt solution called a brine. The cheese block or wheel floats in a brine tank for hours, days or even weeks. During that time, the cheese absorbs some of the salt, which adds flavor and protects against unwanted bacterial or pathogen growth.

A graphic showing the many steps between a farmer harvesting milk from cows and the cheese reaching the consumer.
The cheese production process.
UW Center for Dairy Research

Cheese is a living, fermented food

While the cheesemaker is completing all these steps, several important bacterial processes are occurring. The cheesemaker adds cheese cultures, which are bacteria they choose that produce specific flavors, at the beginning of the process. Adding them to the milk while it is still liquid gives the bacteria time to ferment the lactose in the milk.

Historically, cheesemakers used raw milk, and the bacteria in the raw milk soured the cheese. Now, cheesemakers use pasteurization, a mild heat treatment that destroys any pathogens present in the raw milk. But using this treatment means the cheesemakers need to add back in some bacteria called starters – these “start” the fermentation process.

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Pasteurization provides a more controlled process for the cheesemaker, as they can select specific bacteria to add, rather than whatever is present in the raw milk.
Essentially, these bacteria eat (ferment) the sugar – the lactose – and in doing so produce lactic acid, as well as other desirable flavor compounds in the cheese like diacetyl, which smells like hot buttered popcorn.

In some types of cheese, these cultures stay active in the cheese long after it leaves the cheese vat. Many cheesemakers age their cheeses for weeks, months or even years to give the fermentation process more time to develop the desired flavors. Aged cheeses include Parmesan, aged cheddars and Gouda.

A person in a white coat holds a wheel of cheese.
A Wisconsin cheesemaker inspects a wheel of Parmesan in the aging room. Aging is an important step in the production of many cheeses, as it allows for flavor .
The Dairy Farmers of Wisconsin

In essence, cheesemaking is a milk concentration process. Cheesemakers want their final product to have the milk proteins, fat and nutrients, without as much of the water. For example, the main milk protein that is captured in the cheesemaking process is casein. Milk might contain about 2.5% casein content, but a finished cheese like cheddar may contain about 25% casein (protein). So cheese contains lots of nutrients protein, calcium and fat.

Infinite possibilities with cheese

There are hundreds of different varieties of cow's milk cheese made across the globe, and they all start with milk. All of these different varieties are produced by adjusting the cheesemaking process.

For some cheeses, like Limburger, the cheesemaker rubs a smear – a solution containing various types of bacteria – on the cheese's surface during the aging process. For others, like Camembert, the cheesemaker places the cheese in an (e.g., a cave) that encourages mold growth.

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Others like bandaged cheddar are wrapped with bandages or covered with ash. Adding a bandage or ash onto the cheese's surface helps protect it from excessive mold growth, and it reduces the amount of moisture lost to evaporation. This creates a harder cheese with stronger flavors.

A man in a white apron and hat stands in a room full of shelves stacked with cheese.
Wisconsin Master Cheesemaker Joe Widmer in his brick cheese aging room. Brick cheese is a smear-ripened cheese – it is produced by applying a salt solution to the exterior of the cheese as it ages.
Dairy Farmers of Wisconsin

Over the past 60 years, cheesemakers have figured out how to select the right bacterial cultures to make cheese with specific flavors and textures. The possibilities are endless, and there's no limit to the cheesemaker's imagination.The Conversation

John A. Lucey, Professor of Food Science, University of Wisconsin-Madison

This article is republished from The Conversation under a Creative Commons license. Read the original article.

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